Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10092
Genomic locus:	chr4:137003733-137054816
Size/Length:	51083 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_008305
Gene Symbol:	Hspg2
Chromosome:	chr4
TSS:	137024717 (Transcription start site)
TES:	137126545 (Transcription end site)
Strand:	+
Number of Exons:	97
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr4:137003733-137054816
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10092

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036233	mSE_10092	chr4	137003733	137006425	2692	1177.76
CM036234	mSE_10092	chr4	137016141	137018013	1872	244.4
CM036235	mSE_10092	chr4	137024683	137027923	3240	3100
CM036236	mSE_10092	chr4	137031358	137032474	1116	135.75
CM036237	mSE_10092	chr4	137032475	137035871	3396	890.48
CM036238	mSE_10092	chr4	137035891	137037552	1661	480.9
CM036239	mSE_10092	chr4	137043904	137046822	2918	168.25
CM036240	mSE_10092	chr4	137047810	137052376	4566	2353.13
CM036241	mSE_10092	chr4	137052479	137054816	2337	423.55