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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10093
Genomic locus: chr17:35622026-35650348
Size/Length: 28322 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_013633
Gene Symbol: Pou5f1
Chromosome: chr17
TSS: 35642976 (Transcription start site)
TES: 35647722 (Transcription end site)
Strand: +
Number of Exons: 5
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr17:35622026-35650348
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10093

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM035077 mSE_10093 chr17 35622026 35623078 1052 453.37
CM035078 mSE_10093 chr17 35623111 35624329 1218 286.26
CM035079 mSE_10093 chr17 35624857 35626226 1369 507.75
CM035080 mSE_10093 chr17 35626492 35628518 2026 1260.04
CM035081 mSE_10093 chr17 35635726 35647366 11640 3100
CM035082 mSE_10093 chr17 35647603 35648721 1118 91.78
CM035083 mSE_10093 chr17 35649280 35650348 1068 120.73