Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10094
Genomic locus:	chr6:148892657-148944080
Size/Length:	51423 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_019643
Gene Symbol:	Fam60a
Chromosome:	chr6
TSS:	148869580 (Transcription start site)
TES:	148894954 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr6:148892657-148944080
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10094

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036759	mSE_10094	chr6	148892657	148895079	2422	927.97
CM036760	mSE_10094	chr6	148895137	148896241	1104	432.48
CM036761	mSE_10094	chr6	148902345	148903122	777	305.01
CM036762	mSE_10094	chr6	148903589	148906727	3138	3100
CM036763	mSE_10094	chr6	148909792	148910254	462	130.73
CM036764	mSE_10094	chr6	148919688	148921043	1355	633.64
CM036765	mSE_10094	chr6	148930533	148932568	2035	540.23
CM036766	mSE_10094	chr6	148934584	148935248	664	152.75
CM036767	mSE_10094	chr6	148938923	148940958	2035	3100
CM036768	mSE_10094	chr6	148941142	148942466	1324	2087.75
CM036769	mSE_10094	chr6	148942692	148944080	1388	1638.52