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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10096
Genomic locus: chr8:74833346-74863263
Size/Length: 29917 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_008452
Gene Symbol: Klf2
Chromosome: chr8
TSS: 74842960 (Transcription start site)
TES: 74845553 (Transcription end site)
Strand: +
Number of Exons: 3
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr8:74833346-74863263
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10096

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037226 mSE_10096 chr8 74833346 74836430 3084 842.58
CM037227 mSE_10096 chr8 74836483 74837551 1068 187.89
CM037228 mSE_10096 chr8 74838103 74840182 2079 1033.83
CM037229 mSE_10096 chr8 74840199 74842710 2511 1370.97
CM037230 mSE_10096 chr8 74843910 74847754 3844 829.39
CM037231 mSE_10096 chr8 74855668 74862232 6564 3100
CM037232 mSE_10096 chr8 74862267 74863263 996 155.36