Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10097
Genomic locus:	chr19:23130245-23170638
Size/Length:	40393 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_010638
Gene Symbol:	Klf9
Chromosome:	chr19
TSS:	23215715 (Transcription start site)
TES:	23241401 (Transcription end site)
Strand:	+
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr19:23130245-23170638
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10097

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035390	mSE_10097	chr19	23130245	23133964	3719	2606.24
CM035391	mSE_10097	chr19	23139674	23140913	1239	297.13
CM035392	mSE_10097	chr19	23148252	23150702	2450	1933.44
CM035393	mSE_10097	chr19	23150767	23151864	1097	383.41
CM035394	mSE_10097	chr19	23158537	23159229	692	144.18
CM035395	mSE_10097	chr19	23159383	23161376	1993	617.16
CM035396	mSE_10097	chr19	23161698	23165883	4185	3100
CM035397	mSE_10097	chr19	23165964	23167801	1837	1124.7
CM035398	mSE_10097	chr19	23167880	23168719	839	680.91
CM035399	mSE_10097	chr19	23168959	23170638	1679	453.82