Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10098
Genomic locus:	chr8:37590188-37623737
Size/Length:	33549 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_176952
Gene Symbol:	6430573F11Rik
Chromosome:	chr8
TSS:	37552244 (Transcription start site)
TES:	37576067 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr8:37590188-37623737
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10098

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037168	mSE_10098	chr8	37590188	37591867	1679	370.21
CM037169	mSE_10098	chr8	37595738	37597173	1435	415.69
CM037170	mSE_10098	chr8	37598633	37603144	4511	3100
CM037171	mSE_10098	chr8	37609608	37614317	4709	3100
CM037172	mSE_10098	chr8	37622135	37623737	1602	331.53