Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10099
Genomic locus:	chr1:168053754-168085793
Size/Length:	32039 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_021610
Gene Symbol:	Gpa33
Chromosome:	chr1
TSS:	168060590 (Transcription start site)
TES:	168096641 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr1:168053754-168085793
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10099

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033529	mSE_10099	chr1	168053754	168055585	1831	3100
CM033530	mSE_10099	chr1	168055591	168056089	498	334.67
CM033531	mSE_10099	chr1	168056149	168059058	2909	3201.32
CM033532	mSE_10099	chr1	168059821	168069448	9627	1042.95
CM033533	mSE_10099	chr1	168069654	168070432	778	106.75
CM033534	mSE_10099	chr1	168071024	168073613	2589	861.7
CM033535	mSE_10099	chr1	168077852	168079307	1455	171.83
CM033536	mSE_10099	chr1	168080110	168080876	766	103.17
CM033537	mSE_10099	chr1	168080981	168083577	2596	396.4
CM033538	mSE_10099	chr1	168084383	168085793	1410	98.73