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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10103
Genomic locus: chr6:91615178-91664370
Size/Length: 49192 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_009320
Gene Symbol: Slc6a6
Chromosome: chr6
TSS: 91634060 (Transcription start site)
TES: 91709057 (Transcription end site)
Strand: +
Number of Exons: 15
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr6:91615178-91664370
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10103

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036644 mSE_10103 chr6 91615178 91616861 1683 254.6
CM036645 mSE_10103 chr6 91617935 91619668 1733 351.01
CM036646 mSE_10103 chr6 91628499 91629657 1158 132.42
CM036647 mSE_10103 chr6 91631764 91635049 3285 750.27
CM036648 mSE_10103 chr6 91639818 91641850 2032 427.32
CM036649 mSE_10103 chr6 91649747 91652344 2597 1344.31
CM036650 mSE_10103 chr6 91654062 91654742 680 114.08
CM036651 mSE_10103 chr6 91654766 91656717 1951 267.36
CM036652 mSE_10103 chr6 91659315 91664370 5055 3100