Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10104
Genomic locus:	chr1:120522160-120548866
Size/Length:	26706 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol:	Tcfcp2l1
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr1:120522160-120548866
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10104

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033424	mSE_10104	chr1	120522160	120523342	1182	170.18
CM033425	mSE_10104	chr1	120527199	120527746	547	92.3
CM033426	mSE_10104	chr1	120535900	120536705	805	117.27
CM033427	mSE_10104	chr1	120537292	120537821	529	233.75
CM033428	mSE_10104	chr1	120537913	120541192	3279	2922.23
CM033429	mSE_10104	chr1	120541214	120548866	7652	3100