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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10106
Genomic locus: chr6:122288042-122319422
Size/Length: 31380 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_007905
Gene Symbol: Phc1
Chromosome: chr6
TSS: 122267748 (Transcription start site)
TES: 122289675 (Transcription end site)
Strand: -
Number of Exons: 15
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr6:122288042-122319422
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10106

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036665 mSE_10106 chr6 122288042 122291944 3902 3100
CM036666 mSE_10106 chr6 122292045 122297384 5339 3100
CM036667 mSE_10106 chr6 122302943 122303668 725 189.53
CM036668 mSE_10106 chr6 122305650 122306606 956 317.78
CM036669 mSE_10106 chr6 122314961 122315422 461 113.38
CM036670 mSE_10106 chr6 122315646 122317920 2274 2554.48
CM036671 mSE_10106 chr6 122318039 122319422 1383 156.32