Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10109
Genomic locus:	chr15:98798813-98831861
Size/Length:	33048 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_011653
Gene Symbol:	Tuba1a
Chromosome:	chr15
TSS:	98780277 (Transcription start site)
TES:	98783932 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr15:98798813-98831861
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10109

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034807	mSE_10109	chr15	98798813	98800631	1818	735.79
CM034808	mSE_10109	chr15	98800669	98800999	330	94.32
CM034809	mSE_10109	chr15	98801636	98802864	1228	567.44
CM034810	mSE_10109	chr15	98812062	98813375	1313	314.12
CM034811	mSE_10109	chr15	98813729	98814545	816	141.82
CM034812	mSE_10109	chr15	98814934	98817368	2434	1034.96
CM034813	mSE_10109	chr15	98817422	98823652	6230	3100
CM034814	mSE_10109	chr15	98823699	98824298	599	1064.77
CM034815	mSE_10109	chr15	98827749	98828350	601	141.3
CM034816	mSE_10109	chr15	98831065	98831861	796	110.51