Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10110
Genomic locus:	chr2:30913097-30952636
Size/Length:	39539 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_019406
Gene Symbol:	Fnbp1
Chromosome:	chr2
TSS:	30908754 (Transcription start site)
TES:	30997528 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:30913097-30952636
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10110

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035509	mSE_10110	chr2	30913097	30914476	1379	127.06
CM035510	mSE_10110	chr2	30915902	30919051	3149	1230.5
CM035511	mSE_10110	chr2	30919891	30925657	5766	3100
CM035512	mSE_10110	chr2	30925937	30926813	876	186.79
CM035513	mSE_10110	chr2	30936133	30938682	2549	420.36
CM035514	mSE_10110	chr2	30941953	30946083	4130	778.14
CM035515	mSE_10110	chr2	30947015	30948464	1449	474.32
CM035516	mSE_10110	chr2	30949360	30952636	3276	1450.33