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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10111
Genomic locus: chr16:8747515-8792929
Size/Length: 45414 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001003918
Gene Symbol: Usp7
Chromosome: chr16
TSS: 8688814 (Transcription start site)
TES: 8738435 (Transcription end site)
Strand: -
Number of Exons: 31
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr16:8747515-8792929
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10111

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034856 mSE_10111 chr16 8747515 8748844 1329 548.65
CM034857 mSE_10111 chr16 8748906 8749432 526 91.15
CM034858 mSE_10111 chr16 8749449 8749992 543 92.07
CM034859 mSE_10111 chr16 8754484 8755766 1282 479.9
CM034860 mSE_10111 chr16 8756724 8757968 1244 345.23
CM034861 mSE_10111 chr16 8758559 8758932 373 102.16
CM034862 mSE_10111 chr16 8759054 8759562 508 174.75
CM034863 mSE_10111 chr16 8759622 8760210 588 115.22
CM034864 mSE_10111 chr16 8765962 8769470 3508 1023.55
CM034865 mSE_10111 chr16 8769558 8770438 880 269.12
CM034866 mSE_10111 chr16 8770750 8772582 1832 817.41
CM034867 mSE_10111 chr16 8772748 8775011 2263 1254.91
CM034868 mSE_10111 chr16 8775338 8777739 2401 778.6
CM034869 mSE_10111 chr16 8778003 8778783 780 383.83
CM034870 mSE_10111 chr16 8778930 8779426 496 394.5
CM034871 mSE_10111 chr16 8779628 8780287 659 113.49
CM034872 mSE_10111 chr16 8780399 8781786 1387 345.73
CM034873 mSE_10111 chr16 8781875 8784105 2230 615.26
CM034874 mSE_10111 chr16 8787135 8788068 933 393.86
CM034875 mSE_10111 chr16 8788071 8790240 2169 2191.14
CM034876 mSE_10111 chr16 8790574 8792929 2355 257.11