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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10112
Genomic locus: chr1:154922949-154949007
Size/Length: 26058 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_008485
Gene Symbol: Lamc2
Chromosome: chr1
TSS: 154969885 (Transcription start site)
TES: 155033577 (Transcription end site)
Strand: -
Number of Exons: 24
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr1:154922949-154949007
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10112

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033509 mSE_10112 chr1 154922949 154925196 2247 1911.43
CM033510 mSE_10112 chr1 154930498 154931278 780 149.43
CM033511 mSE_10112 chr1 154933136 154934343 1207 269.45
CM033512 mSE_10112 chr1 154937104 154945081 7977 3100
CM033513 mSE_10112 chr1 154945246 154947018 1772 273.46
CM033514 mSE_10112 chr1 154948064 154949007 943 159.5