Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10114
Genomic locus:	chr11:107370391-107409070
Size/Length:	38679 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_198298
Gene Symbol:	Helz
Chromosome:	chr11
TSS:	107409273 (Transcription start site)
TES:	107548257 (Transcription end site)
Strand:	+
Number of Exons:	32
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:107370391-107409070
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10114

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034206	mSE_10114	chr11	107370391	107373414	3023	1893.53
CM034207	mSE_10114	chr11	107377826	107379275	1449	422.77
CM034208	mSE_10114	chr11	107379955	107380945	990	297.7
CM034209	mSE_10114	chr11	107386197	107387655	1458	375.23
CM034210	mSE_10114	chr11	107388093	107392005	3912	1389.9
CM034211	mSE_10114	chr11	107392252	107394791	2539	1415.49
CM034212	mSE_10114	chr11	107394931	107395866	935	334.06
CM034213	mSE_10114	chr11	107396161	107397392	1231	757.84
CM034214	mSE_10114	chr11	107397710	107398250	540	99.08
CM034215	mSE_10114	chr11	107399163	107401645	2482	1449.84
CM034216	mSE_10114	chr11	107401696	107402127	431	428.16
CM034217	mSE_10114	chr11	107402309	107402936	627	215.79
CM034218	mSE_10114	chr11	107403276	107403707	431	134.09
CM034219	mSE_10114	chr11	107406682	107409070	2388	2600.19