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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10116
Genomic locus: chr4:133366770-133398206
Size/Length: 31436 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_009097
Gene Symbol: Rps6ka1
Chromosome: chr4
TSS: 133403205 (Transcription start site)
TES: 133443712 (Transcription end site)
Strand: -
Number of Exons: 22
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr4:133366770-133398206
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10116

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036207 mSE_10116 chr4 133366770 133370170 3400 3100
CM036208 mSE_10116 chr4 133370190 133373754 3564 3100
CM036209 mSE_10116 chr4 133376155 133377630 1475 611.02
CM036210 mSE_10116 chr4 133377672 133378271 599 114.42
CM036211 mSE_10116 chr4 133383420 133384248 828 161.5
CM036212 mSE_10116 chr4 133395662 133398206 2544 1009.18