Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10118
Genomic locus:	chr14:55694809-55717068
Size/Length:	22259 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001039198
Gene Symbol:	Zfhx2
Chromosome:	chr14
TSS:	55680495 (Transcription start site)
TES:	55710885 (Transcription end site)
Strand:	-
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr14:55694809-55717068
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10118

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034581	mSE_10118	chr14	55694809	55699825	5016	3100
CM034582	mSE_10118	chr14	55699932	55701172	1240	389.02
CM034583	mSE_10118	chr14	55701594	55703277	1683	348.09
CM034584	mSE_10118	chr14	55703389	55708011	4622	3100
CM034585	mSE_10118	chr14	55709784	55711215	1431	249.2
CM034586	mSE_10118	chr14	55712832	55715197	2365	230.14
CM034587	mSE_10118	chr14	55715685	55717068	1383	187.56