Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10119
Genomic locus:	chr11:22496599-22530477
Size/Length:	33878 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_153596
Gene Symbol:	Tmem17
Chromosome:	chr11
TSS:	22412285 (Transcription start site)
TES:	22419234 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:22496599-22530477
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10119

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033882	mSE_10119	chr11	22496599	22497126	527	98.48
CM033883	mSE_10119	chr11	22499467	22501288	1821	1151.79
CM033884	mSE_10119	chr11	22501364	22504542	3178	1345.45
CM033885	mSE_10119	chr11	22505798	22506557	759	136.94
CM033886	mSE_10119	chr11	22506607	22509031	2424	1065.98
CM033887	mSE_10119	chr11	22509105	22511825	2720	2503.83
CM033888	mSE_10119	chr11	22513656	22514745	1089	228.86
CM033889	mSE_10119	chr11	22519415	22521165	1750	2148.1
CM033890	mSE_10119	chr11	22521281	22523192	1911	1575.52
CM033891	mSE_10119	chr11	22527174	22530477	3303	551.91