Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10120
Genomic locus:	chr4:118741993-118814875
Size/Length:	72882 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_011400
Gene Symbol:	Slc2a1
Chromosome:	chr4
TSS:	118781349 (Transcription start site)
TES:	118809934 (Transcription end site)
Strand:	+
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr4:118741993-118814875
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10120

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036095	mSE_10120	chr4	118741993	118745734	3741	2560.52
CM036096	mSE_10120	chr4	118745745	118749814	4069	1348.93
CM036097	mSE_10120	chr4	118755208	118755683	475	97.02
CM036098	mSE_10120	chr4	118766720	118768390	1670	93.92
CM036099	mSE_10120	chr4	118777428	118779142	1714	593
CM036100	mSE_10120	chr4	118781347	118782592	1245	169.82
CM036101	mSE_10120	chr4	118787651	118788911	1260	103.79
CM036102	mSE_10120	chr4	118791175	118795913	4738	767.04
CM036103	mSE_10120	chr4	118797808	118799579	1771	317.46
CM036104	mSE_10120	chr4	118808328	118811161	2833	314.88
CM036105	mSE_10120	chr4	118813268	118814875	1607	403.49