Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10121
Genomic locus:	chr14:76893137-76941679
Size/Length:	48542 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001177751
Gene Symbol:	Tsc22d1
Chromosome:	chr14
TSS:	76888242 (Transcription start site)
TES:	76907573 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr14:76893137-76941679
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10121

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034615	mSE_10121	chr14	76893137	76893854	717	106.43
CM034616	mSE_10121	chr14	76893867	76896952	3085	1982.53
CM034617	mSE_10121	chr14	76898668	76899596	928	175.8
CM034618	mSE_10121	chr14	76899677	76900729	1052	309.16
CM034619	mSE_10121	chr14	76903211	76904229	1018	248.92
CM034620	mSE_10121	chr14	76904361	76905774	1413	958.82
CM034621	mSE_10121	chr14	76905827	76906742	915	249.25
CM034622	mSE_10121	chr14	76907563	76908319	756	115.17
CM034623	mSE_10121	chr14	76912269	76918703	6434	3100
CM034624	mSE_10121	chr14	76927634	76928752	1118	243.22
CM034625	mSE_10121	chr14	76932212	76933981	1769	431.74
CM034626	mSE_10121	chr14	76940609	76941679	1070	130.25