Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10122
Genomic locus:	chr11:100235224-100261504
Size/Length:	26280 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_010593
Gene Symbol:	Jup
Chromosome:	chr11
TSS:	100230169 (Transcription start site)
TES:	100259104 (Transcription end site)
Strand:	-
Number of Exons:	14
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:100235224-100261504
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10122

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034145	mSE_10122	chr11	100235224	100236033	809	343.77
CM034146	mSE_10122	chr11	100236212	100239815	3603	2741.9
CM034147	mSE_10122	chr11	100245419	100253018	7599	3100
CM034148	mSE_10122	chr11	100256065	100259109	3044	1207.6
CM034149	mSE_10122	chr11	100260527	100261504	977	91.93