Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10123
Genomic locus:	chr15:97191502-97225661
Size/Length:	34159 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_178114
Gene Symbol:	Amigo2
Chromosome:	chr15
TSS:	97074504 (Transcription start site)
TES:	97077718 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr15:97191502-97225661
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10123

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034797	mSE_10123	chr15	97191502	97193131	1629	358.92
CM034798	mSE_10123	chr15	97193460	97194567	1107	102.74
CM034799	mSE_10123	chr15	97198383	97200373	1990	853.44
CM034800	mSE_10123	chr15	97201159	97202444	1285	533.47
CM034801	mSE_10123	chr15	97202725	97205465	2740	3100
CM034802	mSE_10123	chr15	97205539	97206318	779	393.82
CM034803	mSE_10123	chr15	97206369	97208868	2499	2885.95
CM034804	mSE_10123	chr15	97211927	97215372	3445	668.54
CM034805	mSE_10123	chr15	97224358	97225661	1303	528.45