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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10124
Genomic locus: chr8:34915061-34957333
Size/Length: 42272 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001167922
Gene Symbol: Gtf2e2
Chromosome: chr8
TSS: 34842810 (Transcription start site)
TES: 34887645 (Transcription end site)
Strand: +
Number of Exons: 8
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr8:34915061-34957333
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10124

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037119 mSE_10124 chr8 34915061 34917902 2841 242.68
CM037120 mSE_10124 chr8 34919672 34922643 2971 577.5
CM037121 mSE_10124 chr8 34923071 34927397 4326 3100
CM037122 mSE_10124 chr8 34928336 34930070 1734 429.54
CM037123 mSE_10124 chr8 34938796 34942502 3706 2627.79
CM037124 mSE_10124 chr8 34945495 34946426 931 101.59
CM037125 mSE_10124 chr8 34950453 34953443 2990 1371.35
CM037126 mSE_10124 chr8 34953450 34954927 1477 351
CM037127 mSE_10124 chr8 34956188 34957333 1145 142.74