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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10125
Genomic locus: chr1:72251256-72302755
Size/Length: 51499 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001005423
Gene Symbol: Mreg
Chromosome: chr1
TSS: 72205806 (Transcription start site)
TES: 72258881 (Transcription end site)
Strand: -
Number of Exons: 5
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr1:72251256-72302755
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10125

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033356 mSE_10125 chr1 72251256 72252579 1323 178.2
CM033357 mSE_10125 chr1 72253048 72254266 1218 399.46
CM033358 mSE_10125 chr1 72257138 72258818 1680 639.48
CM033359 mSE_10125 chr1 72258934 72259682 748 157.28
CM033360 mSE_10125 chr1 72259748 72262703 2955 1749.54
CM033361 mSE_10125 chr1 72262934 72264372 1438 449.65
CM033362 mSE_10125 chr1 72271505 72272551 1046 604.01
CM033363 mSE_10125 chr1 72273712 72274091 379 95.1
CM033364 mSE_10125 chr1 72274131 72275027 896 616.64
CM033365 mSE_10125 chr1 72275113 72275544 431 144.94
CM033366 mSE_10125 chr1 72275835 72276316 481 206.8
CM033367 mSE_10125 chr1 72276383 72277982 1599 405.28
CM033368 mSE_10125 chr1 72279422 72280148 726 329.44
CM033369 mSE_10125 chr1 72280932 72281507 575 239.03
CM033370 mSE_10125 chr1 72282560 72283400 840 687.97
CM033371 mSE_10125 chr1 72283819 72285555 1736 1754.31
CM033372 mSE_10125 chr1 72288734 72291052 2318 579.01
CM033373 mSE_10125 chr1 72292316 72293424 1108 261.51
CM033374 mSE_10125 chr1 72295138 72295811 673 277.89
CM033375 mSE_10125 chr1 72301697 72302755 1058 164.05