Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10126
Genomic locus:	chr11:88459880-88493085
Size/Length:	33205 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001201341
Gene Symbol:	Msi2
Chromosome:	chr11
TSS:	88547267 (Transcription start site)
TES:	88579581 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:88459880-88493085
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10126

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034023	mSE_10126	chr11	88459880	88463160	3280	2104.24
CM034024	mSE_10126	chr11	88463243	88465006	1763	317.27
CM034025	mSE_10126	chr11	88475462	88476204	742	161.53
CM034026	mSE_10126	chr11	88478281	88484181	5900	3100
CM034027	mSE_10126	chr11	88484198	88485342	1144	214.12
CM034028	mSE_10126	chr11	88485553	88486994	1441	633.4
CM034029	mSE_10126	chr11	88487240	88491436	4196	2680.68
CM034030	mSE_10126	chr11	88491730	88493085	1355	471.15