Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10130
Genomic locus:	chr3:133171798-133200925
Size/Length:	29127 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001040400
Gene Symbol:	Tet2
Chromosome:	chr3
TSS:	133126640 (Transcription start site)
TES:	133207354 (Transcription end site)
Strand:	-
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr3:133171798-133200925
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10130

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035964	mSE_10130	chr3	133171798	133172504	706	169.09
CM035965	mSE_10130	chr3	133175870	133176347	477	113.38
CM035966	mSE_10130	chr3	133176374	133177714	1340	156.8
CM035967	mSE_10130	chr3	133178088	133179525	1437	529.7
CM035968	mSE_10130	chr3	133179622	133183160	3538	3105.73
CM035969	mSE_10130	chr3	133183740	133184279	539	97.34
CM035970	mSE_10130	chr3	133186079	133186621	542	116.28
CM035971	mSE_10130	chr3	133186905	133189788	2883	2141.65
CM035972	mSE_10130	chr3	133190636	133191182	546	203.67
CM035973	mSE_10130	chr3	133192679	133193186	507	218.35
CM035974	mSE_10130	chr3	133193550	133195537	1987	2314.6
CM035975	mSE_10130	chr3	133195665	133197779	2114	3100
CM035976	mSE_10130	chr3	133198417	133199615	1198	586.5
CM035977	mSE_10130	chr3	133200370	133200925	555	111.08