Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10131
Genomic locus:	chr13:40979523-41041215
Size/Length:	61692 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_008105
Gene Symbol:	Gcnt2
Chromosome:	chr13
TSS:	40982126 (Transcription start site)
TES:	41056261 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr13:40979523-41041215
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10131

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034420	mSE_10131	chr13	40979523	40980860	1337	117.11
CM034421	mSE_10131	chr13	40981153	40983834	2681	3100
CM034422	mSE_10131	chr13	40984020	40984742	722	111.65
CM034423	mSE_10131	chr13	40988697	40990603	1906	307.23
CM034424	mSE_10131	chr13	40992927	40993568	641	195.08
CM034425	mSE_10131	chr13	41002743	41003596	853	267.24
CM034426	mSE_10131	chr13	41008616	41010050	1434	307.41
CM034427	mSE_10131	chr13	41010275	41013627	3352	3190.85
CM034428	mSE_10131	chr13	41019615	41020274	659	137.1
CM034429	mSE_10131	chr13	41032293	41033280	987	159.86
CM034430	mSE_10131	chr13	41038807	41041215	2408	1292.06