Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10134
Genomic locus:	chr13:55263637-55315189
Size/Length:	51552 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_008739
Gene Symbol:	Nsd1
Chromosome:	chr13
TSS:	55311142 (Transcription start site)
TES:	55419686 (Transcription end site)
Strand:	+
Number of Exons:	23
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr13:55263637-55315189
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10134

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034456	mSE_10134	chr13	55263637	55264332	695	153.5
CM034457	mSE_10134	chr13	55268035	55268958	923	122.54
CM034458	mSE_10134	chr13	55279503	55280021	518	90.71
CM034459	mSE_10134	chr13	55283427	55284382	955	373.31
CM034460	mSE_10134	chr13	55290616	55293122	2506	3088.21
CM034461	mSE_10134	chr13	55299697	55300222	525	155.87
CM034462	mSE_10134	chr13	55300438	55302011	1573	1090.85
CM034463	mSE_10134	chr13	55302297	55304478	2181	1018.6
CM034464	mSE_10134	chr13	55304821	55305859	1038	317.96
CM034465	mSE_10134	chr13	55305932	55308752	2820	1809.76
CM034466	mSE_10134	chr13	55309234	55312971	3737	1309.03
CM034467	mSE_10134	chr13	55313201	55315189	1988	848.11