Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10136
Genomic locus:	chr11:11708451-11733627
Size/Length:	25176 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_021891
Gene Symbol:	Fignl1
Chromosome:	chr11
TSS:	11700290 (Transcription start site)
TES:	11708965 (Transcription end site)
Strand:	-
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:11708451-11733627
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10136

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033823	mSE_10136	chr11	11708451	11711597	3146	1130.58
CM033824	mSE_10136	chr11	11711819	11712610	791	102.43
CM033825	mSE_10136	chr11	11720432	11721649	1217	488.13
CM033826	mSE_10136	chr11	11721696	11723849	2153	3100
CM033827	mSE_10136	chr11	11723874	11725144	1270	143.71
CM033828	mSE_10136	chr11	11727903	11730334	2431	2686.06
CM033829	mSE_10136	chr11	11730768	11731412	644	176.22
CM033830	mSE_10136	chr11	11731596	11731991	395	110.91
CM033831	mSE_10136	chr11	11732005	11733627	1622	1532.79