Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10137
Genomic locus:	chr15:77676700-77720916
Size/Length:	44216 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_022410
Gene Symbol:	Myh9
Chromosome:	chr15
TSS:	77591014 (Transcription start site)
TES:	77672605 (Transcription end site)
Strand:	-
Number of Exons:	41
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr15:77676700-77720916
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10137

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034745	mSE_10137	chr15	77676700	77680878	4178	2059.6
CM034746	mSE_10137	chr15	77681406	77682399	993	471.43
CM034747	mSE_10137	chr15	77687761	77689267	1506	687.11
CM034748	mSE_10137	chr15	77689588	77690313	725	106.06
CM034749	mSE_10137	chr15	77692845	77695548	2703	897.32
CM034750	mSE_10137	chr15	77695880	77697914	2034	1358.07
CM034751	mSE_10137	chr15	77698168	77699113	945	392.12
CM034752	mSE_10137	chr15	77704089	77704778	689	93.46
CM034753	mSE_10137	chr15	77711750	77714854	3104	1703.8
CM034754	mSE_10137	chr15	77717141	77719908	2767	807.28
CM034755	mSE_10137	chr15	77719963	77720916	953	92.58