Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10138
Genomic locus:	chr2:169985535-170033615
Size/Length:	48080 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001033299
Gene Symbol:	Zfp217
Chromosome:	chr2
TSS:	169934142 (Transcription start site)
TES:	169956720 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:169985535-170033615
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10138

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035760	mSE_10138	chr2	169985535	169986168	633	99.07
CM035761	mSE_10138	chr2	169990586	169992101	1515	222.54
CM035762	mSE_10138	chr2	169999481	170000501	1020	291.21
CM035763	mSE_10138	chr2	170006693	170007700	1007	163.15
CM035764	mSE_10138	chr2	170008832	170009782	950	473.99
CM035765	mSE_10138	chr2	170009845	170011616	1771	1913.03
CM035766	mSE_10138	chr2	170016331	170017151	820	128.81
CM035767	mSE_10138	chr2	170017290	170022824	5534	3100
CM035768	mSE_10138	chr2	170026744	170028224	1480	377.92
CM035769	mSE_10138	chr2	170030119	170031742	1623	1505.87
CM035770	mSE_10138	chr2	170031945	170033615	1670	635.86