Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10139
Genomic locus:	chr7:120393737-120411935
Size/Length:	18198 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_007489
Gene Symbol:	Arntl
Chromosome:	chr7
TSS:	120350978 (Transcription start site)
TES:	120457640 (Transcription end site)
Strand:	+
Number of Exons:	20
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr7:120393737-120411935
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10139

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036992	mSE_10139	chr7	120393737	120395096	1359	147.87
CM036993	mSE_10139	chr7	120398676	120399905	1229	138.95
CM036994	mSE_10139	chr7	120400167	120401039	872	112.87
CM036995	mSE_10139	chr7	120401109	120401747	638	274.68
CM036996	mSE_10139	chr7	120402221	120402558	337	112.63
CM036997	mSE_10139	chr7	120402603	120406603	4000	3100
CM036998	mSE_10139	chr7	120406919	120409631	2712	3100
CM036999	mSE_10139	chr7	120409640	120410326	686	117.55
CM037000	mSE_10139	chr7	120410827	120411935	1108	194.98