Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10141
Genomic locus:	chr6:143087949-143121224
Size/Length:	33275 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_029250
Gene Symbol:	Etnk1
Chromosome:	chr6
TSS:	143115749 (Transcription start site)
TES:	143157066 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr6:143087949-143121224
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10141

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036740	mSE_10141	chr6	143087949	143093034	5085	3100
CM036741	mSE_10141	chr6	143095101	143096635	1534	508.1
CM036742	mSE_10141	chr6	143096730	143098151	1421	368.09
CM036743	mSE_10141	chr6	143098184	143098981	797	149.98
CM036744	mSE_10141	chr6	143099264	143099855	591	104.04
CM036745	mSE_10141	chr6	143099973	143101185	1212	261.12
CM036746	mSE_10141	chr6	143102132	143106415	4283	3134.22
CM036747	mSE_10141	chr6	143106533	143107684	1151	211.33
CM036748	mSE_10141	chr6	143110043	143111009	966	190.8
CM036749	mSE_10141	chr6	143112216	143113418	1202	242.86
CM036750	mSE_10141	chr6	143114033	143115776	1743	742.92
CM036751	mSE_10141	chr6	143115791	143116746	955	219.4
CM036752	mSE_10141	chr6	143120656	143121224	568	96.08