Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10144
Genomic locus:	chr8:35068660-35105432
Size/Length:	36772 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001286168
Gene Symbol:	Rbpms
Chromosome:	chr8
TSS:	34893115 (Transcription start site)
TES:	35040335 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr8:35068660-35105432
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10144

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037153	mSE_10144	chr8	35068660	35069650	990	527.72
CM037154	mSE_10144	chr8	35069809	35072980	3171	1577.91
CM037155	mSE_10144	chr8	35073249	35074935	1686	905.85
CM037156	mSE_10144	chr8	35075253	35075858	605	296.85
CM037157	mSE_10144	chr8	35076760	35078436	1676	889.27
CM037158	mSE_10144	chr8	35083516	35085099	1583	428.39
CM037159	mSE_10144	chr8	35086044	35086515	471	104.76
CM037160	mSE_10144	chr8	35092327	35092830	503	146.25
CM037161	mSE_10144	chr8	35100008	35100651	643	170.91
CM037162	mSE_10144	chr8	35100695	35105432	4737	3100