Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10146
Genomic locus:	chr2:71172282-71195427
Size/Length:	23145 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_172436
Gene Symbol:	Slc25a12
Chromosome:	chr2
TSS:	71112351 (Transcription start site)
TES:	71205611 (Transcription end site)
Strand:	-
Number of Exons:	18
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:71172282-71195427
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10146

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035558	mSE_10146	chr2	71172282	71173644	1362	566.19
CM035559	mSE_10146	chr2	71173997	71176975	2978	1547.05
CM035560	mSE_10146	chr2	71184141	71189329	5188	3100
CM035561	mSE_10146	chr2	71189383	71190092	709	889.27
CM035562	mSE_10146	chr2	71190311	71190750	439	413.68
CM035563	mSE_10146	chr2	71191072	71192733	1661	2657.65
CM035564	mSE_10146	chr2	71192835	71193413	578	184.17
CM035565	mSE_10146	chr2	71193941	71194568	627	222.4
CM035566	mSE_10146	chr2	71194691	71195427	736	176.22