Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10147
Genomic locus:	chr5:114029898-114058360
Size/Length:	28462 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_008153
Gene Symbol:	Cmklr1
Chromosome:	chr5
TSS:	114062363 (Transcription start site)
TES:	114100399 (Transcription end site)
Strand:	-
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr5:114029898-114058360
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10147

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036428	mSE_10147	chr5	114029898	114031019	1121	324.57
CM036429	mSE_10147	chr5	114033205	114035997	2792	2862.98
CM036430	mSE_10147	chr5	114036024	114036531	507	155.12
CM036431	mSE_10147	chr5	114036933	114040695	3762	740.49
CM036432	mSE_10147	chr5	114040819	114045088	4269	1410.92
CM036433	mSE_10147	chr5	114045128	114048168	3040	3014.12
CM036434	mSE_10147	chr5	114056862	114058360	1498	112.94