Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10148
Genomic locus:	chr3:102992188-103028874
Size/Length:	36686 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_026602
Gene Symbol:	Bcas2
Chromosome:	chr3
TSS:	102975633 (Transcription start site)
TES:	102983077 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr3:102992188-103028874
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10148

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035933	mSE_10148	chr3	102992188	102993269	1081	140.16
CM035934	mSE_10148	chr3	102997146	102997598	452	148.35
CM035935	mSE_10148	chr3	103004329	103005092	763	137.4
CM035936	mSE_10148	chr3	103005256	103006561	1305	330.12
CM035937	mSE_10148	chr3	103007766	103009269	1503	866.15
CM035938	mSE_10148	chr3	103009395	103010046	651	183.79
CM035939	mSE_10148	chr3	103010336	103011916	1580	2737.12
CM035940	mSE_10148	chr3	103011932	103014122	2190	3100
CM035941	mSE_10148	chr3	103014137	103014903	766	181.29
CM035942	mSE_10148	chr3	103015007	103016148	1141	539.59
CM035943	mSE_10148	chr3	103017380	103019486	2106	1711.7
CM035944	mSE_10148	chr3	103019672	103020272	600	713.18
CM035945	mSE_10148	chr3	103020357	103020949	592	130.73
CM035946	mSE_10148	chr3	103028304	103028874	570	218.39