Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10149
Genomic locus:	chr12:12789262-12835490
Size/Length:	46228 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_008709
Gene Symbol:	Mycn
Chromosome:	chr12
TSS:	12942898 (Transcription start site)
TES:	12948642 (Transcription end site)
Strand:	-
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr12:12789262-12835490
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10149

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034274	mSE_10149	chr12	12789262	12791995	2733	1633.79
CM034275	mSE_10149	chr12	12792079	12796768	4689	3105.6
CM034276	mSE_10149	chr12	12797488	12799476	1988	405.35
CM034277	mSE_10149	chr12	12808808	12809764	956	128.51
CM034278	mSE_10149	chr12	12810169	12811423	1254	346.7
CM034279	mSE_10149	chr12	12816882	12818408	1526	247.67
CM034280	mSE_10149	chr12	12826312	12827631	1319	214.45
CM034281	mSE_10149	chr12	12832316	12835490	3174	1744.89