Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10152
Genomic locus:	chr10:84970571-85008483
Size/Length:	37912 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001017525
Gene Symbol:	Btbd11
Chromosome:	chr10
TSS:	85061155 (Transcription start site)
TES:	85123037 (Transcription end site)
Strand:	+
Number of Exons:	15
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr10:84970571-85008483
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10152

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033735	mSE_10152	chr10	84970571	84971539	968	174.01
CM033736	mSE_10152	chr10	84972416	84973717	1301	137.91
CM033737	mSE_10152	chr10	84977405	84978677	1272	305.76
CM033738	mSE_10152	chr10	84987594	84989854	2260	898.09
CM033739	mSE_10152	chr10	85000390	85005680	5290	3100
CM033740	mSE_10152	chr10	85006265	85008483	2218	426.7