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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10153
Genomic locus: chr5:116836724-116898694
Size/Length: 61970 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_030704
Gene Symbol: Hspb8
Chromosome: chr5
TSS: 116858499 (Transcription start site)
TES: 116872873 (Transcription end site)
Strand: -
Number of Exons: 3
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr5:116836724-116898694
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10153

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036444 mSE_10153 chr5 116836724 116837487 763 133.35
CM036445 mSE_10153 chr5 116844825 116845395 570 136.03
CM036446 mSE_10153 chr5 116845427 116846946 1519 727.75
CM036447 mSE_10153 chr5 116856377 116857105 728 194.25
CM036448 mSE_10153 chr5 116857320 116860050 2730 3100
CM036449 mSE_10153 chr5 116860090 116861784 1694 2164.9
CM036450 mSE_10153 chr5 116862297 116863613 1316 297.54
CM036451 mSE_10153 chr5 116863635 116864817 1182 101.01
CM036452 mSE_10153 chr5 116867514 116868755 1241 247.67
CM036453 mSE_10153 chr5 116868941 116870247 1306 433.62
CM036454 mSE_10153 chr5 116870600 116871285 685 217.67
CM036455 mSE_10153 chr5 116883266 116884152 886 225.53
CM036456 mSE_10153 chr5 116887559 116888545 986 255.52
CM036457 mSE_10153 chr5 116889637 116891017 1380 393.15
CM036458 mSE_10153 chr5 116895738 116897177 1439 197.93
CM036459 mSE_10153 chr5 116897888 116898694 806 124.31