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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10156
Genomic locus: chr2:33281436-33321626
Size/Length: 40190 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001085507
Gene Symbol: Zbtb34
Chromosome: chr2
TSS: 33261627 (Transcription start site)
TES: 33286844 (Transcription end site)
Strand: -
Number of Exons: 3
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr2:33281436-33321626
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10156

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM035540 mSE_10156 chr2 33281436 33283124 1688 470.74
CM035541 mSE_10156 chr2 33291429 33294321 2892 1063.6
CM035542 mSE_10156 chr2 33294378 33297882 3504 3100
CM035543 mSE_10156 chr2 33298206 33299131 925 91.76
CM035544 mSE_10156 chr2 33299411 33301659 2248 970.2
CM035545 mSE_10156 chr2 33313250 33314023 773 266.28
CM035546 mSE_10156 chr2 33314428 33316722 2294 775.8
CM035547 mSE_10156 chr2 33316793 33318103 1310 527.32
CM035548 mSE_10156 chr2 33320413 33321626 1213 162.44