Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10158
Genomic locus:	chr15:102217159-102233652
Size/Length:	16493 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_013672
Gene Symbol:	Sp1
Chromosome:	chr15
TSS:	102236746 (Transcription start site)
TES:	102266835 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr15:102217159-102233652
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10158

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034844	mSE_10158	chr15	102217159	102217816	657	144.95
CM034845	mSE_10158	chr15	102219078	102220163	1085	344.2
CM034846	mSE_10158	chr15	102220422	102221847	1425	869.85
CM034847	mSE_10158	chr15	102222178	102223863	1685	1615.42
CM034848	mSE_10158	chr15	102223921	102227660	3739	1991.28
CM034849	mSE_10158	chr15	102228066	102233031	4965	3100
CM034850	mSE_10158	chr15	102233163	102233652	489	194.33