Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10161
Genomic locus:	chr12:102233736-102264590
Size/Length:	30854 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NR_035421
Gene Symbol:	Mir1190
Chromosome:	chr12
TSS:	102259882 (Transcription start site)
TES:	102259978 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr12:102233736-102264590
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10161

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034373	mSE_10161	chr12	102233736	102235431	1695	320.51
CM034374	mSE_10161	chr12	102235497	102236599	1102	119.78
CM034375	mSE_10161	chr12	102245208	102249495	4287	1019.79
CM034376	mSE_10161	chr12	102252083	102258192	6109	3100
CM034377	mSE_10161	chr12	102263152	102264590	1438	165.22