Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10162
Genomic locus:	chr11:33426212-33451919
Size/Length:	25707 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_023146
Gene Symbol:	Ranbp17
Chromosome:	chr11
TSS:	33111793 (Transcription start site)
TES:	33413746 (Transcription end site)
Strand:	-
Number of Exons:	28
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:33426212-33451919
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10162

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033901	mSE_10162	chr11	33426212	33427213	1001	884.14
CM033902	mSE_10162	chr11	33427383	33427820	437	265.16
CM033903	mSE_10162	chr11	33428468	33432085	3617	2013.56
CM033904	mSE_10162	chr11	33432154	33434576	2422	2003.32
CM033905	mSE_10162	chr11	33434664	33435208	544	105.3
CM033906	mSE_10162	chr11	33435248	33439077	3829	3100
CM033907	mSE_10162	chr11	33443002	33444048	1046	721.03
CM033908	mSE_10162	chr11	33444091	33444957	866	249.09
CM033909	mSE_10162	chr11	33450955	33451919	964	300.31