Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10163
Genomic locus:	chr5:77678373-77702727
Size/Length:	24354 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_011263
Gene Symbol:	Rest
Chromosome:	chr5
TSS:	77694518 (Transcription start site)
TES:	77712722 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr5:77678373-77702727
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10163

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036382	mSE_10163	chr5	77678373	77679648	1275	160.09
CM036383	mSE_10163	chr5	77681046	77681533	487	124.82
CM036384	mSE_10163	chr5	77681578	77682138	560	222.61
CM036385	mSE_10163	chr5	77682296	77684847	2551	1852.81
CM036386	mSE_10163	chr5	77685738	77687869	2131	1049.1
CM036387	mSE_10163	chr5	77688058	77691132	3074	2706.51
CM036388	mSE_10163	chr5	77691219	77694475	3256	1711.09
CM036389	mSE_10163	chr5	77694489	77696568	2079	1326.64
CM036390	mSE_10163	chr5	77696970	77698237	1267	440.62
CM036391	mSE_10163	chr5	77702208	77702727	519	103.8