Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10164
Genomic locus:	chr15:81341724-81355743
Size/Length:	14019 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_019712
Gene Symbol:	Rbx1
Chromosome:	chr15
TSS:	81296745 (Transcription start site)
TES:	81306799 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr15:81341724-81355743
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10164

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034769	mSE_10164	chr15	81341724	81342888	1164	664.68
CM034770	mSE_10164	chr15	81342959	81343613	654	93.07
CM034771	mSE_10164	chr15	81343955	81346727	2772	1576.57
CM034772	mSE_10164	chr15	81346870	81347924	1054	177.94
CM034773	mSE_10164	chr15	81347950	81350563	2613	1877.42
CM034774	mSE_10164	chr15	81350979	81355743	4764	3100