Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10165
Genomic locus:	chr15:77626886-77661816
Size/Length:	34930 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_022410
Gene Symbol:	Myh9
Chromosome:	chr15
TSS:	77591014 (Transcription start site)
TES:	77672605 (Transcription end site)
Strand:	-
Number of Exons:	41
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr15:77626886-77661816
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10165

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034735	mSE_10165	chr15	77626886	77630810	3924	1622.99
CM034736	mSE_10165	chr15	77630861	77631917	1056	343.68
CM034737	mSE_10165	chr15	77644198	77647555	3357	1487.09
CM034738	mSE_10165	chr15	77647618	77648835	1217	145.38
CM034739	mSE_10165	chr15	77650012	77651257	1245	116.87
CM034740	mSE_10165	chr15	77651650	77654659	3009	714.23
CM034741	mSE_10165	chr15	77655465	77656929	1464	210.93
CM034742	mSE_10165	chr15	77657098	77659158	2060	1504.59
CM034743	mSE_10165	chr15	77659337	77660675	1338	367.33
CM034744	mSE_10165	chr15	77660746	77661816	1070	130.74