Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10166
Genomic locus:	chr19:46544726-46605625
Size/Length:	60899 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_053100
Gene Symbol:	Trim8
Chromosome:	chr19
TSS:	46576137 (Transcription start site)
TES:	46590945 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr19:46544726-46605625
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10166

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035443	mSE_10166	chr19	46544726	46546709	1983	399.9
CM035444	mSE_10166	chr19	46551412	46555025	3613	950.71
CM035445	mSE_10166	chr19	46565315	46565701	386	94
CM035446	mSE_10166	chr19	46571373	46571938	565	103.5
CM035447	mSE_10166	chr19	46574484	46580697	6213	3212.65
CM035448	mSE_10166	chr19	46585583	46586389	806	98.16
CM035449	mSE_10166	chr19	46591285	46592779	1494	168.98
CM035450	mSE_10166	chr19	46592822	46594191	1369	160.82
CM035451	mSE_10166	chr19	46596890	46600020	3130	523.65
CM035452	mSE_10166	chr19	46602411	46605625	3214	544.17