Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10168
Genomic locus:	chr11:87822270-87862310
Size/Length:	40040 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001078167
Gene Symbol:	Srsf1
Chromosome:	chr11
TSS:	87860874 (Transcription start site)
TES:	87867259 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:87822270-87862310
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10168

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034007	mSE_10168	chr11	87822270	87823907	1637	130.53
CM034008	mSE_10168	chr11	87828608	87829834	1226	125.46
CM034009	mSE_10168	chr11	87830483	87831340	857	280.77
CM034010	mSE_10168	chr11	87832665	87833438	773	136.97
CM034011	mSE_10168	chr11	87838480	87843169	4689	3100
CM034012	mSE_10168	chr11	87843374	87844637	1263	280.03
CM034013	mSE_10168	chr11	87844804	87846400	1596	253.51
CM034014	mSE_10168	chr11	87856087	87856698	611	109.68
CM034015	mSE_10168	chr11	87859044	87862310	3266	825.83