Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10169
Genomic locus:	chr4:141615476-141634423
Size/Length:	18947 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol:	Gm10565
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr4:141615476-141634423
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10169

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036279	mSE_10169	chr4	141615476	141619717	4241	518.4
CM036280	mSE_10169	chr4	141620286	141624335	4049	2077.6
CM036281	mSE_10169	chr4	141624393	141625591	1198	1645.67
CM036282	mSE_10169	chr4	141625932	141632026	6094	3100
CM036283	mSE_10169	chr4	141632996	141634423	1427	303.67